Modeling host-microbe interactions in immunocompetent engineered human gut tissues - ATAC fragment_files
Published: 5 August 2026| Version 1 | DOI: 10.17632/8pt6w6fc7m.1
Contributors:
, , , , , Description
We used single-cell transcriptome and accessible chromatin sequencing (scMultiome) to characterize the mucus covering colonic epithelium engineered tissue response at 24 hours post infection of Salmonella. This repository contains Cell Ranger Arc generated fragment files of scMultiome data
Files
Steps to reproduce
Please refer to the Method of the "Modeling host-microbe interactions in immunocompetent engineered human gut tissues" (López-Sandoval, Harter, Yu et al) and github repository (https://github.com/devsystemslab/Host-microbe_interaction_model/)
Categories
Chromatin, Intestine, Gene Regulation, Salmonella