Leishmania donovani (HU3) gene models

Published: 18 March 2024| Version 1 | DOI: 10.17632/bxn5xn4x5c.1
Contributor:
Jose M. Requena

Description

This dataset consists of a gtf file containing information to locate all genes (coding and non-coding) that have been annotated to date in the L. donovani (HU3 strain) genome. The genome sequence and gene annotation for this species were determined by Camacho et al (PMID: 30992521), but annotations for several protein-coding genes were improved after the analysis of Ribo-seq data (PMID: 37628688). This updated annotation has also been deposited at ENA (GCA_900635355.2)

Files

Steps to reproduce

Load this file using IGV tool (or similar) in combination with the genome sequence available in the dataset: https://data.mendeley.com/datasets/b82fm2w2h9/2

Institutions

Universidad Autonoma de Madrid Centro de Biologia Molecular Severo Ochoa

Categories

Transcriptome, Genome Annotation, Genome, Leishmania

Funding

Agencia Estatal de Investigación

PID2020-117916RB-I00/AEI/10.13039/501100011033

Related Links

Article
https://pubmed.ncbi.nlm.nih.gov/37628688/
is source of this dataset
Article
https://www.ncbi.nlm.nih.gov/pubmed/30992521
is source of this dataset
Dataset
https://data.mendeley.com/datasets/b82fm2w2h9/2
is related to this dataset

Licence