Resolving SARS-CoV-2 CD4+ T cell specificity via reverse epitope discovery. Pogorelyy et al.

Description

Supplementary spreadsheets for Pogorelyy et al, Cell. Rep. Med 2022 Supplementary Table 1: Differentially expressed genes for each functional Seurat cluster. Related to Fig. 1B. Supplementary Table 2: Unique alpha/beta TCR clonotypes enriched in COVID-19 cohort. Related to Fig. 2A. Supplementary Table 3: Unique alpha/beta TCR clonotypes enriched in healthy control cohort. Related to Fig. 2A. Supplementary Table 4: Activation of NFAT-GFP Jurkat cell lines experiment results. Related to Fig. 3B.

Steps to reproduce

see https://github.com/pogorely/reverse_epitope_discovery

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