Landscape of epitopes targeted by T cells in 852 convalescent COVID-19 patients: Meta-analysis, immunoprevalence and web platform. Quadeer et al
Description
Complete list of unique SARS-CoV-2-specific T cell epitope-HLA pairs (n=711) reported to elicit response in blood samples of convalescent COVID-19 patients. This table includes, for each epitope, the associated HLA allele, location within the proteome, genetic conservation in global SARS-CoV-2 sequences (as of 20 April 2021), and the computed response frequency across studies (as reported in Figure 2 of the paper). Number of total subjects tested, number of responding subjects, and response frequency per study for each epitope-HLA pair are also listed. For (n=90) SARS-CoV-2 epitopes having a genetic match with SARS-CoV known epitopes, the IEDB IDs of the corresponding SARS-CoV epitopes as well as the associated HLAs are listed. This list of epitopes is compiled from both published studies and non-peer-reviewed studies available so far only on preprint servers. Results from non-peer-reviewed studies should be interpreted with caution.