Processed host and bacterial transcriptomic analyses supporting a MODE-K infection model of Edwardsiella piscicida WT44
Description
This dataset supports the Aquaculture manuscript entitled “Cross-model recovery kinetics of Edwardsiella piscicida and parallel host–bacterial transcriptional signatures in a MODE-K infection model.” It contains processed host and bacterial count matrices, sample-quality summaries, complete differential-expression results, enrichment outputs, sensitivity analyses, analysis scripts, software-session information, and checksums. The host analysis compares infected MODE-K cultures (M_4) with matched sham-handled cultures (MK), whereas the bacterial analysis compares the MODE-K-associated WT44 fraction (M_4) with extracellular WT44 (E44). The host and bacterial profiles should be analysed independently. The original FASTQ files were not retained in the archived project materials; the deposited files reproduce the processed count-level analyses reported in the manuscript.