hg38 and mm10 1kb GC and mappability files

Published: 8 September 2022| Version 1 | DOI: 10.17632/jr36ntmzsh.1
Contributor:
Thomas Wilson

Description

hg38 and mm10 GC and mappability files, suitable for use in linCNV and other genomics pipelines. Files *.gc5Base.bin_1000.bed.gz are the average fractional GC content, files *.kmer_50.bin_1000.bed.gz are the average fractional mappability using a kmer size of 50. $ zcat hg38.gc5Base.bin_1000.bed.gz | head -n4 chr1 10000 11000 200 0.646 . chr1 11000 12000 200 0.543 . chr1 12000 13000 200 0.6 . chr1 13000 14000 200 0.575 . $ zcat hg38.kmer_50.bin_1000.bed.gz | head -n4 chr1 10000 11000 . 0.155 . chr1 11000 12000 . 0.105 . chr1 13000 14000 . 0.056 . chr1 14000 15000 . 0.05 .

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Institutions

University of Michigan

Categories

Genomics, Bioinformatics

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