Context embeddings trained on short sequence FASTA files with 3D structures
Published: 24 April 2023| Version 1 | DOI: 10.17632/jrvm4bbc5h.1
Contributor:
Daniel UmDescription
Data to generate "FIGURE 3: Context embeddings trained on short sequence FASTA files with 3D structures – N = 17552" for "Vector Embeddings by Sequence Similarity and Context for Improved Compression, Similarity Search, Clustering, Organization, and Manipulation of cDNA Libraries" by Daniel H. Um, et al.
Files
Steps to reproduce
Use Context_Embeddings_3D_Plot_Generation_Script.ipynb on 3D_Structure_1_200_seq_length_17552.fasta to generate 3D_plot_FASTA_files_with_3D_structures.png.
Institutions
Columbia University
Categories
Bioinformatics, Machine Learning