Annotated genes in cassava/mandioca/yuca (Manihot esculenta) via Eggnog-mapper, iTAK and PlantTFDB
Published: 26 April 2024| Version 1 | DOI: 10.17632/kmjg84z8cj.1
Contributors:
, Description
This dataset contains annotated genes files of the widespread starchy crop cassava/mandioca/yuca. Coding protein genes of GCF_001659605.2_M.esculenta_v8 were characterized via the Eggnog-mapper, iTAK and PlantTFDB tools. The resultant annotated genes files are valuable and now available to the interested community for downstream analysis.
Files
Steps to reproduce
Analyzed genome is available at: https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/659/605/GCF_001659605.2_M.esculenta_v8 Methods are available at: http://eggnog-mapper.embl.de/ http://itak.feilab.net/cgi-bin/itak/online_itak.cgi http://planttfdb.gao-lab.org/prediction.php
Institutions
Consejo Nacional de Investigaciones Cientificas y Tecnicas, Universidad Nacional de Misiones Facultad de Ciencias Exactas Quimicas y Naturales, Instituto de Biologia Subtropical
Categories
Protein Annotation, Crop Genetics, Computational Biology