The spatial RNA integrity number (sRIN) assay for in situ evaluation of transcriptome quality

Name: The spatial RNA integrity number (sRIN) assay for in situ evaluation of transcriptome quality
Creator: Linda Kvastad
Published: 2020-09-23T14:24:58.314Z
Keywords: Biotechnology, Cancer, RNA, Quality Control, Transcriptomics, Spatial Analysis

Kvastad, Linda; Carlberg, Konstantin; Larsson, Ludvig; Gracia Villacampa , Eva; Stuckey , Alexander; Stenbeck , Linnea; Mollbrink , Annelie; Zamboni , Margherita; Magnusson , Jens Peter; Basmaci , Elisa; Shamikh, Alia; Prochazka, Gabriella; Schaupp, Anna-Lena; Borg, Åke; Fugger, Lars; Nistér, Monica; Lundeberg, Joakim

doi:10.17632/kzfd6mbnxg.1

The spatial RNA integrity number (sRIN) assay for in situ evaluation of transcriptome quality

Published: 23 September 2020| Version 1 | DOI: 10.17632/kzfd6mbnxg.1

Contributors:

Linda Kvastad, Konstantin Carlberg, Ludvig Larsson, Eva Gracia Villacampa , Alexander Stuckey , Linnea Stenbeck , Annelie Mollbrink , Margherita Zamboni , Jens Peter Magnusson , Elisa Basmaci , Alia Shamikh, Gabriella Prochazka, Anna-Lena Schaupp, Åke Borg, Lars Fugger, Monica Nistér, Joakim Lundeberg

Description

The data set is used in the publication by Kvastad et al entitled "The spatial RNA integrity number (sRIN) assay for in situ evaluation of transcriptome quality”. The data set includes: the original gel files, HE images, tif files used to generate the sRIN heat maps and graphs, count matrixes and spot coordinates used for ST plots and exon/intergenic mapping rate data. Please refer to Metadata.xlsx for more details.

The spatial RNA integrity number (sRIN) assay for in situ evaluation of transcriptome quality

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