BOTJLS-Dec-2024-4571-ART-Grevillea

Published: 8 April 2025| Version 1 | DOI: 10.17632/m8ggj24jdp.1
Contributor:
Josh Kestel

Description

Structure input file for the filtered datasets that you used in the analyses.

Files

Steps to reproduce

Filtering in-group data in DartR filter1 <- gl.filter.secondaries(gl, method="best", v=3) filter2 <- gl.filter.rdepth(filter1, lower=5, upper=100, v=3) filter3 <- gl.filter.reproducibility(filter2, t=0.99, v=3) filter4 <- gl.filter.callrate(filter3, method="loc", threshold=0.90, v=3) filter5 <- gl.filter.maf(filter4, threshold=0.02, verbose=3) filter6 <- gl.filter.monomorphs(filter5, v=2) filter7 <- gl.filter.callrate(filter6, method="ind", threshold=0.90) filter7 # // 122 genotypes, 9,805 binary SNPs, size: 74.1 Mb # 47006 (3.93 %) missing data

Institutions

  • Western Australia Department of Biodiversity Conservation and Attractions

Categories

Population, Single Nucleotide Polymorphism, Species Conservation, Native Plant

Licence