EST-SSR development from de novo transcriptome assembly of Typhonium flagelliforme

Published: 27 May 2025| Version 1 | DOI: 10.17632/mt7w6y8p9z.1
Contributor:
devit purwoko

Description

Title: Data set EST-SSR Primer of Typhonium flagelliforme This data is an appendix to the publication of the proceedings paper at The 2nd International Seminar on Tropical Bioresources Advancement and Technology (ISOTOBAT 2025).

Files

Steps to reproduce

High-quality sequencing reads were utilized to assemble the transcriptome using the rnaSPAdes tool available on the Galaxy platform. The resulting contig sequences from this assembly and subsequent processing served as input for SSR analysis. SSR motif identification and primer optimization were carried out using PrimerPro v1.0.

Institutions

  • Badan Riset dan Inovasi Nasional Republik Indonesia
  • Institut Pertanian Bogor

Categories

Genetics, Molecular Biology, Life Sciences, Conservation Biology, Agricultural Genetics, Applied Genetics

Funders

  • Join Collaboration Home BRIN Biological and Environmental Research Organization Program
    Grant ID: B-1797/III.5/PR.03.06/6/2024
  • RIIM Collaborative Platform Biology Biomolecular Structure Biodiversity Batch I
    Grant ID: B-2657/III.5/FR.06.00/6/2024

Licence