184 mandarin genotype data

Description

The GBS sequencing of 240 mandarin samples produced 96.3 Gb of high quality se-quence data (Q20≥93.78%, Q30≥85.19%), the GC distribution was normal, and the average comparison rate between the population sample and the reference genome of Clementina was 93.79%. After filtering at a 4× sequencing depth, miss 0.2, and a minor allele frequency (MAF) > 0.01, 114,200 high-quality SNPs were obtained. Then, 112,768 high-quality SNPs of 184 mandarins were extracted from the simplified ge-nomes of 240 mandarins (reference genome: https://www.ncbi.nlm.nih.gov/datasets/genome/GCF_000493195.1_Citrus_clementina_v1.0) by PLINK1.9 software.

Categories

Licence