C. concisus PglH2 Sequence Similarity Network, Genome Neighborhood Diagrams, and Phylogenetic Tree
Published: 14 June 2024| Version 1 | DOI: 10.17632/t526y4skdp.1
Contributors:
Nemanja Vuksanovic, , Description
The datasets include Cytoscape-compatible files containing the sequence similarity network (SSN), genome neighborhood diagrams of C. concisus PglH2 ATCC 33237, and a maximum-likelihood phylogenetic tree of Campylobacterales PglH homologs. Dataset S1 is an all-by-all BLAST network file with 90% representative nodes and an E-value of 1 x 10^-5. Dataset S2 contains genome neighborhood diagrams from the 90% representative node network, with a co-occurrence threshold of 20%. Dataset S3 is a consensus maximum-likelihood tree of Campylobacterales PglH homologs identified from the SSN, as well as SSN members with a BLAST value above 6 x 10^-19.
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Institutions
Massachusetts Institute of Technology, Boston University
Categories
Glycoconjugate, Membrane Protein