interSeg: Accurate Prediction of ecDNA in Interphase Cancer Cells using Deep Neural Networks

Published: 24 November 2025| Version 1 | DOI: 10.17632/t9vmmjg3zc.1
Contributors:
,
, Ellis Curtis,
,
,
,
, Kristen Turner, Julie Wiese, Justin Wahl, Homa Hemmati,
, Jessica Theissen, Matthias Fischer,
,
,
,

Description

Dataset used for Training and Benchmarking "Accurate Prediction of ecDNA in Interphase Cancer Cells using Deep Neural Networks" by Prasad*, Rajkumar* et al. To view the methods, preprocessing steps, and analysis, please view the preprint available on bioRxiv (https://doi.org/10.1101/2025.06.23.661188).

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Institutions

  • University of California San Diego
  • Stanford University
  • Charite Universitatsmedizin Berlin
  • University of Texas Southwestern Medical Center at Dallas

Categories

Computer Vision, Fluorescence in Situ Hybridization

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