Fusarium EF-1α sequence database

Description

Fusarium EF-1α sequence database. Dada2 format.

Steps to reproduce

Database creation: The Fusarium database for EF1α sequences was constructed according to Boutigny et al. 2019 https://doi.org/10.1371/journal.pone.0207988. Fungal EF1α sequences were extracted from NCBI GenBank (https://www.ncbi.nlm.nih.gov/genbank/) (accessed 18.10.2023) using the query: (fungi[All Fields] OR fungi[Organism] OR fusarium[Title]) AND (translation elongation factor[Title] OR tef1[Title] OR translation elongation factor-1 alpha[Title] OR elongation[Title] OR EF1-a[Title] OR tef-1[Title]) AND (CBS*[Title] OR NRRL*[Title] OR MUCL*[Title] OR voucher*[Title] OR DAOM*[Title] OR MAFF*[Title] OR MIAE*[Title] OR IPO*[Title] OR ATCC*[Title] OR LMSA*[Title]) AND (100[SLEN]: 3000[SLEN]) NOT Fusarium sp.[Title] NOT IonTorrent[All Fields] NOT (TEF3[Title] OR translation elongation factor 3[Title] OR tef-3[Title] OR elongation factor 3[Title] OR EF-3[Title]). D In addition, sequences from Cobo-Díaz et al. 2019, https://doi.org/10.3389/fmicb.2019.00261 were added to the database.

Institutions

• VTT Technical Research Centre of Finland

  Uusimaa, Espoo

Categories

Licence