Data for: Phylogenetic implications of mitogenome rearrangements in East Asian potamiscine freshwater crabs (Brachyura: Potamidae)

Published: 4 Dec 2019 | Version 1 | DOI: 10.17632/xv7npzzttg.1
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Description of this data

13+2BIalignment.nex: sequence alignment of 13 PCGs + 2 rRNAs NT dataset for BI reconstruction including mrbayes model.

13+2BI.result: BI result tree of 13 PCGs + 2 rRNAs NT dataset.

13+2NT.phy: sequence alignment (Phylip format) of 13 PCGs + 2 rRNAs dataset for ML reconstruction.

13+2RAxML_bipartitions.result: ML result tree of 13 PCGs + 2 rRNAs NT dataset.

13AA.phy: sequence alignment of 13 PCGs AA dataset.

13AABI.tre: result BI tree based on 13 PCGs AA dataset.

13AARAxML_bipartitions.result: result ML tree based on 13 PCGs AA dataset.

13NT.phy: sequence alignment of 13 PCGs NT dataset.

13NTBI3.tre: result BI tree based on 13 PCGs NT dataset.

13NTRAxML_bipartitions.result: result ML tree based on 13 PCGs NT dataset.

BMPmatric.nex: data matric for BMP analysis.

BMPtree.tre: result tree of BMP analysis.

EMPmatric.nex: data matric for EMP analysis.

EMPtree.tre: result tree of EMP analysis.

LeuAlignment.nex: sequence alignment for trnLs phylogenetic.

LeuTree.tre: result tree of trnLs phylogenetic.

NCR.phy: sequence alignment for mNCRs phylogenetic.

NCRml.tre: result tree of mNCRs phylogenetic.

trexinput1~8.txt: input files for TreeREx analyses.

trex1~8.dot, trex1~8.out, trex1~8.pdf: output files of TreeREx analyses.

Experiment data files

This data is associated with the following publication:

Phylogenetic implications of mitogenome rearrangements in East Asian potamiscine freshwater crabs (Brachyura: Potamidae)

Published in: Molecular Phylogenetics and Evolution

Latest version

  • Version 1

    2019-12-04

    Published: 2019-12-04

    DOI: 10.17632/xv7npzzttg.1

    Cite this dataset

    Sun, Hongying; Zhang, Zhan; Pan, Da; Cheng, Jiajia; Cumberlidge, Neil; Lv, Lingna; Xing, Yuhui (2019), “Data for: Phylogenetic implications of mitogenome rearrangements in East Asian potamiscine freshwater crabs (Brachyura: Potamidae)”, Mendeley Data, v1 http://dx.doi.org/10.17632/xv7npzzttg.1

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Categories

Phylogenomics, Gene Rearrangement

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