Mouse reference dataset GRCm38 (mm10) containing EGFP cDNA required for Cell Ranger, v3.1.0

Published: 25 January 2021| Version 1 | DOI: 10.17632/xzk2zyymxy.1
Contributors:
Shinnosuke Suzuki,
John McCarrey,
Brian Hermann

Description

Mouse reference dataset GRCm38 (mm10) v93 containing EGFP cDNA required for Cell Ranger, v3.1.0

Files

Steps to reproduce

Using the CellRanger v.3.1.0 --mkref command (10x Genomics), the eGFP cDNA sequence was added as a novel chromosome to the Mus_musculus.GRCm38.93 reference assembly and annotation. Default settings were used to generate the reference for CellRanger --count applications. The reference folder was compressed as a tarball.

Institutions

University of Texas at San Antonio

Categories

RNA Sequencing, Functional Genomics

License