Leptospira glycosyltransferases - sequences and phylogenies
Published: 29 November 2024| Version 1 | DOI: 10.17632/zf4scz7syj.1
Contributors:
Jan Lyczakowski, Description
Dataset containing FASTA files with GT2, GT4 and GTnc sequences of selected Leptospira species and serovars analysed to identify genes implicated in LPS biosynthesis. A dataset contains also a NEWICK file with GT2 phylogeny reconstructed with WAG+G algorithm using MEGA11.
Files
Steps to reproduce
Identification of specific GT families in CAZY and collection of relevant linked data from GenBank. Phylogenetic analysis with MEGA11 using the WAG+G protocol and 100 bootstrap replicates.
Institutions
Uniwersytet Rolniczy im. Hugona Kollataja w Krakowie, Uniwersytet Jagiellonski w Krakowie Wydzial Biochemii Biofizyki i Biotechnologii
Categories
Glycosyltransferase, Molecular Phylogenetics, Leptospira
Funding
Narodowe Centrum Nauki
2019/33/B/NZ9/02159