INNODIA Small RNAseq Raw data
Description
The dataset contains csv file (semicolon delimited) of raw small RNAseq data from the first INNODIA cohort (Targeted and Untargeted sequencing platforms) and from the second INNODIA cohort (Untargeted sequencing platform). Raw read counts in the Untargeted datasets were obtained through the GeneGlobe pipeline with the removal of PCR duplicates, while the HTG EdgeSeq parser was used for the quantification for the Targeted sequencing platform. Technical replicates are indicated as 'b' with the same Sample number.
Files
Steps to reproduce
Technical replicates were collapsed, and raw read counts were normalized using the DESeq2 median of the ratios method. Subsequently, only common and correlated miRNAs between Targeted and Untargeted sequencing platforms were retained for further analyses within the first cohort.