Fisheries Research

Microsatellite genotypes of cuckoo rays in structure format

Database of prey fed by jumbo squid in south-central Chile during 2014

Luminosity scores of the lake trout in experiment 1

The file contains data from L. santolla (Southern king crab) ovigerous female an the estimated 3D clutch volumen. Also there is information of egg size, egg stage and carapace length.

This is Catch and Effort Assessment Data from Lake Victoria. Also included are Secchi measurements since the late 1920s to 2018 collected in various studies.

Zip file contains an R project as organized below: These data were collected to compare efficiency of different bait types in terms of their impact on CPUE and body size. The analysis files are meant to be run sequentially 1-5. Analysis files are fully commented. File #2, in particular, documents our data exploration. Green_Crab_Bait_Choice | |- Green_Crab_Bait_Choice.Rproj # The R project. Open this file in R studio. | |- Description.txt # You're reading it. | |- analysis/ | +- 1-DataSetup.R # Run this first. Loads and error-checks the data. | +- 2-DataExploration.R # Data exploration code. Run this second. Does some additional cleanup too. | +- 3-Analysis-CatchRate.R # Conducts modelling associated with Y: CPUE | +- 4-Analysis-BodySize.R # Conducts modelling associated with Y: Carapace Width | +- 5-EggAndSex.R # Contains a brief piece of code looking at sex and proportion of ovigerous females | |- R/ | +- 6003Functions.R # Script containing a few convenience functions | |- data/ | +- MAB_BodySizes.csv # body size data | +- MAB_Overview.csv # Catch data | +- MAB_Positions.csv # Location data | |- Excel/ | +- MAB_FieldData.xls # Contains raw data collected from field. Do not work from this spreadsheet | |- figures/ # Contains figures for the MS. Note that I manually pieced some of these together from R output

This dataset contains a reference library of records of digital photographs of different species of beam-trawled flatfish which were either fresh or defrosted. For each picture the settings (e.g., shutter speed and aperture settings of the camera) were specified and which side was photographed (ventral vs dorsal).

Two data files are included for this manuscript 1) blue marlin SNP data as produced using the DArTseq genome complexity reduction technology and double digest restriction-site sequencing method; and 2) blue marlin microsatellite allele frequencies.

The files uploaded include working tables related to the bycatch mitigation and outcomes (Table A.1); seal exclusion device (SED) trials with problems encountered and how they were solved (Table A.2); square mesh net barrier trials (Table A.3); underwater footage analysed (Table A.4) and the current license conditions regarding SED requirements (Fig.A.1).

The example and source code are intended to be accessible to the editor and reviewers during the review process and will uploaded on the open access online platform GitHub (https://github.com/jabbamodel/JABBA-Select) - pending publication.