Computer Methods and Programs in Biomedicine

A database containing prostate histology whole slide images with both annotations of global Gleason scores and path-level Gleason grades. Data associated with the paper: Silva-Rodríguez, J., Colomer, A., Sales, M. A., Molina, R., & Naranjo, V. (2020). Going deeper through the Gleason scoring scale : An automatic end-to-end system for histology prostate grading and cribriform pattern detection. Computer Methods and Programs in Biomedicine, 195. https://doi.org/10.1016/j.cmpb.2020.105637

Simulated data set, and its R script, which was used to obtain the results provided in this paper.

Here, two free and online publicly available databases: STARE and DRIVE for retinal blood vessels

The dataset contains 5 pairs of images (for a total of 10 images). The images have been preprocessed, segmented and masked. Affine transformation has been applied across pre- and intra-operative pairs, i.e they are ready for non-rigid registration. There are 3 pairs of images of a liver phantom based on patient specific data. Deformation simulating pneumoperitoneum has been applied to these images. ARTORG centre and Cascination produced the phantom. They are x-ray reconstructions (DynaCT). Images 6 - 9 are image pairs of pre- and intra- operative porcine liver MRI scans conducted at Oslo University Hospital - Rikshospitalet, Norway. Intra-operative images have pneumoperitoneum applied to the abdomen. They are contrast-enhanced MR images (enhanced-T1 high-resolution isotropic volume examination (eTHRIVE)). The dataset was created at and owned by The Intervention Center, Oslo University Hospital - Rikshospitalet, Norway.

This files contains all codes, data as well as descriptions of its use accompanied with reproducible examples.

DataBase.xls: PCA 1st component of the radial, circumferential and longitudinal strain for the main study and the follow-up study. strain.mat: data file with radial, circumferential and longitudinal strain values for the 16 AHA segments of the main and the follow-up studies.

The article contains a set of 12 linear and nonlinear indices extracted from Fetal Heart Rate (FHR) recordings by means of CTG monitors on two groups of fetuses: 60 normals and 60 Intra Uterine Growth Restricted (IUGR) fetuses. The two populations were selected by clinicians after birth on the basis of clinical standards for detecting growth restricted newborns (Apgar scores, percentile weight, …). The indices were computed on FHR recordings, each one lasting more than 30 minutes, by means of algorithms already published in the scientific literature.

Data Health Literacy Survey in Semarang, Indonesia using HLS-EU-Q47

Research data file contains the appendices referenced in the article. Spreadshets contain the most relevant anonymized information of the participants during the study period.

Source code for our CPR manikin that simulates blood pressure and end tidal CO2 waveforms for the purpose of training the titration of CPR mechanics to physiology, as recommended by the American Heart Association.