Molecular Phylogenetics and Evolution
ISSN: 1055-7903
Visit Journal website
Datasets associated with articles published in Molecular Phylogenetics and Evolution
Filter Results
251 results
Data Types:
  • Other
  • Dataset
The vcf file of the SNP calls and the abc scripts for EST-SSR data used in this study
Data Types:
  • Dataset
  • File Set
Data Types:
  • Other
  • Dataset
This repository contains the research data associated with the article "The late blooming amphipods: global change promoted post-Jurassic ecological radiation despite Palaeozoic origin". It contains a concatenated alignment (COI, H3, 28S and 18S markers) in nexus format, a chronogram obtained with BEAST in nexus format, and a maximum likelihood phylogram obtained with IQTREE in newick format.
Data Types:
  • Other
  • Software/Code
  • Dataset
Supplemental data for the manuscript "Phylogenetic relationships and systematics of the Amazonian poison frog genus Ameerega using ultraconserved genomic elements". Contains per-locus alignments, tree files, and instructional code.
Data Types:
  • Dataset
  • File Set
Research data: Concatenated alignment used to infer the divergence times and biogeographic history of Loasoideae and maximum clade credibility trees of Cornales in .tre format for callibration schemes A, B and C. Refer to the main article: Acuña, Luebert, Henning & Weigend. Major lineages of Loasaceae subfam. Loasoideae diversified during the Andean uplift. Molecular Phylogenetics and Evolution, for details.
Data Types:
  • Software/Code
  • Dataset
  • Text
The data associated with the article "Extracting Phylogenetic Signal from Phylogenomic Data: Higher-Level Relationships of the Nightbirds (Strisores)" published in 2019 in Molecular Phylogenetics and Evolution by Noor D. White and Michael J. Braun includes the following files: Matrices_phylip.tar.gz: Concatenated nucleotide matrices used in this study, including character sets detailing individual UCE loci Tree files are those found in Figure 5 of the manuscript. They include: Trees_concatenated_ACGT.tar.gz: Results of the concatenated analysis of nucleotide matrices Trees_concatenated_RY.tar.gz: Results of the concatenated analysis of RY-coded matrices Trees_gene_tree_sum_ACGT.tar.gz: Results of the gene tree summarization of nucleotide matrices Trees_gene_tree_sum_RY.tar.gz: Results of the gene tree summarization of RY-coded matrices Trees_Low_GC_Variance.tar.gz: Results of the concatenated analysis of nucleotide matrices containing only UCE loci with low GC variance (10% highest GC variant loci removed) Trees_Part_by_Locus.tar.gz: Results of the concatenated analysis of nucleotide matrices partitioned by UCE locus
Data Types:
  • Dataset
  • Text
  • File Set
Data Types:
  • Other
  • Dataset
Data Types:
  • Other
  • Dataset
Data Types:
  • Other
  • Dataset
1